IL_9G8M_027

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCCCG*CCC

Length

9 nucleotides

Bulged bases

9G8M|1|L5|C|502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_027 not in the Motif Atlas

Homologous match to IL_8GLP_030

Geometric discrepancy: 0.5666

The information below is about IL_8GLP_030

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9G8M|1|L5|G|499
9G8M|1|L5|G|500
9G8M|1|L5|C|501
9G8M|1|L5|C|502
9G8M|1|L5|C|503
9G8M|1|L5|G|504
*
9G8M|1|L5|C|654
9G8M|1|L5|C|655
9G8M|1|L5|C|656

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4