IL_9G8M_040

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

9G8M|1|L5|C|1210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_040 not in the Motif Atlas

Geometric match to IL_1DQF_001

Geometric discrepancy: 0.3608

The information below is about IL_1DQF_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

9G8M|1|L5|C|1086
9G8M|1|L5|A|1087
*
9G8M|1|L5|U|1209
9G8M|1|L5|C|1210
9G8M|1|L5|G|1211

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30