IL_9G8M_067
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 9G8M|1|L5|U|2068
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G8M_067 not in the Motif Atlas
- Homologous match to IL_8P9A_276
- Geometric discrepancy: 0.1392
- The information below is about IL_8P9A_276
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
9G8M|1|L5|U|1903
9G8M|1|L5|U|1904
9G8M|1|L5|A|1905
9G8M|1|L5|A|1906
9G8M|1|L5|G|1907
*
9G8M|1|L5|C|2065
9G8M|1|L5|C|2066
9G8M|1|L5|A|2067
9G8M|1|L5|U|2068
9G8M|1|L5|A|2069
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LF
- Large ribosomal subunit protein uL30
- Chain LQ
- 60S ribosomal protein L18
- Chain Le
- 60S ribosomal protein L32
- Chain Lf
- 60S ribosomal protein L35a
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