IL_9G8M_072
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9G8M|1|L5|C|1933, 9G8M|1|L5|A|2039, 9G8M|1|L5|U|2042, 9G8M|1|L5|G|2043
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G8M_072 not in the Motif Atlas
- Homologous match to IL_8P9A_280
- Geometric discrepancy: 0.1671
- The information below is about IL_8P9A_280
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9G8M|1|L5|G|1931
9G8M|1|L5|A|1932
9G8M|1|L5|C|1933
9G8M|1|L5|C|1934
9G8M|1|L5|C|1935
9G8M|1|L5|C|1936
9G8M|1|L5|A|1937
9G8M|1|L5|G|1938
9G8M|1|L5|A|1939
9G8M|1|L5|A|1940
9G8M|1|L5|A|1941
9G8M|1|L5|A|1942
*
9G8M|1|L5|U|2036
9G8M|1|L5|G|2037
9G8M|1|L5|A|2038
9G8M|1|L5|A|2039
9G8M|1|L5|A|2040
9G8M|1|L5|A|2041
9G8M|1|L5|U|2042
9G8M|1|L5|G|2043
9G8M|1|L5|G|2044
9G8M|1|L5|A|2045
9G8M|1|L5|U|2046
9G8M|1|L5|G|2047
9G8M|1|L5|G|2048
9G8M|1|L5|C|2049
9G8M|1|L5|G|2050
9G8M|1|L5|C|2051
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- 60S ribosomal protein L3
- Chain LI
- Ribosomal protein uL16-like
- Chain LO
- 60S ribosomal protein L13a
- Chain Lf
- 60S ribosomal protein L35a
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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