IL_9G8M_073

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9G8M|1|L5|U|1945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_073 not in the Motif Atlas

Homologous match to IL_8P9A_281

Geometric discrepancy: 0.2331

The information below is about IL_8P9A_281

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9G8M|1|L5|G|1944
9G8M|1|L5|U|1945
9G8M|1|L5|G|1946
*
9G8M|1|L5|C|2033
9G8M|1|L5|C|2034

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LH

60S ribosomal protein L9

Chain LS

60S ribosomal protein L18a

Chain Lm

Ubiquitin-60S ribosomal protein L40