IL_9G8M_084

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

9G8M|1|L5|G|2544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_084 not in the Motif Atlas

Geometric match to IL_4RUM_001

Geometric discrepancy: 0.2496

The information below is about IL_4RUM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

9G8M|1|L5|G|2540
9G8M|1|L5|A|2541
9G8M|1|L5|G|2542
9G8M|1|L5|U|2543
9G8M|1|L5|G|2544
9G8M|1|L5|G|2545
*
9G8M|1|L5|C|2770
9G8M|1|L5|G|2771
9G8M|1|L5|C|2772

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lk

60S ribosomal protein L38