IL_9G8M_096

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9G8M|1|L5|U|2878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_096 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0994

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9G8M|1|L5|C|2865
9G8M|1|L5|G|2866
9G8M|1|L5|U|2867
9G8M|1|L5|A|2868
9G8M|1|L5|A|2869
9G8M|1|L5|C|2870
*
9G8M|1|L5|G|2875
9G8M|1|L5|G|2876
9G8M|1|L5|A|2877
9G8M|1|L5|U|2878
9G8M|1|L5|A|2879
9G8M|1|L5|A|2880
9G8M|1|L5|G|2881

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA