IL_9G8M_107

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_107 not in the Motif Atlas

Homologous match to IL_8C3A_096

Geometric discrepancy: 0.1464

The information below is about IL_8C3A_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9G8M|1|L5|G|3893
9G8M|1|L5|C|3894
9G8M|1|L5|G|3895
9G8M|1|L5|G|3896
*
9G8M|1|L5|U|4561
9G8M|1|L5|A|4562
9G8M|1|L5|C|4563

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a