IL_9G8M_122

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9G8M|1|L5|U|4435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_122 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.1525

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9G8M|1|L5|G|4403
9G8M|1|L5|U|4404
9G8M|1|L5|G|4405
*
9G8M|1|L5|U|4433
9G8M|1|L5|U|4434
9G8M|1|L5|U|4435
9G8M|1|L5|U|4436
9G8M|1|L5|U|4437

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LI

Ribosomal protein uL16-like