IL_9G8M_125

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

9G8M|1|L5|G|4520, 9G8M|1|L5|A|4521

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_125 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0943

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

9G8M|1|L5|C|4454
9G8M|1|L5|U|4455
9G8M|1|L5|C|4456
*
9G8M|1|L5|G|4518
9G8M|1|L5|U|4519
9G8M|1|L5|G|4520
9G8M|1|L5|A|4521
9G8M|1|L5|G|4522

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23