IL_9G8M_132

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

9G8M|1|L5|C|4718

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_132 not in the Motif Atlas

Homologous match to IL_8P9A_342

Geometric discrepancy: 0.1833

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9G8M|1|L5|C|4580
9G8M|1|L5|C|4581
9G8M|1|L5|A|4582
9G8M|1|L5|U|4583
*
9G8M|1|L5|A|4715
9G8M|1|L5|G|4716
9G8M|1|L5|G|4717
9G8M|1|L5|C|4718
9G8M|1|L5|G|4719

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a