IL_9G8M_139

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

9G8M|1|L5|A|4706

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_139 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2225

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9G8M|1|L5|G|4678
9G8M|1|L5|A|4679
9G8M|1|L5|U|4680
9G8M|1|L5|U|4681
9G8M|1|L5|A|4682
9G8M|1|L5|U|4683
*
9G8M|1|L5|A|4703
9G8M|1|L5|G|4704
9G8M|1|L5|A|4705
9G8M|1|L5|A|4706
9G8M|1|L5|U|4707
9G8M|1|L5|C|4708

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40