IL_9G8M_143

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCCUG*CGUCAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_143 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3678

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

9G8M|1|L5|G|4882
9G8M|1|L5|U|4883
9G8M|1|L5|C|4884
9G8M|1|L5|C|4885
9G8M|1|L5|U|4886
9G8M|1|L5|G|4887
*
9G8M|1|L5|C|4928
9G8M|1|L5|G|4929
9G8M|1|L5|U|4930
9G8M|1|L5|C|4931
9G8M|1|L5|A|4932
9G8M|1|L5|C|4933

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain Lf

60S ribosomal protein L35a