IL_9G8M_197

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_197 not in the Motif Atlas

Homologous match to IL_8C3A_439

Geometric discrepancy: 0.1097

The information below is about IL_8C3A_439

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

9G8M|1|S2|G|942
9G8M|1|S2|U|943
9G8M|1|S2|A|944
9G8M|1|S2|U|945
*
9G8M|1|S2|A|981
9G8M|1|S2|G|982
9G8M|1|S2|A|983
9G8M|1|S2|C|984

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain SB

40S ribosomal protein S3a

Chain SO

40S ribosomal protein S14