IL_9G8M_209

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_209 not in the Motif Atlas

Homologous match to IL_8P9A_432

Geometric discrepancy: 0.3463

The information below is about IL_8P9A_432

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

9G8M|1|S2|C|1230
9G8M|1|S2|C|1231
9G8M|1|S2|U|1232
*
9G8M|1|S2|G|1526
9G8M|1|S2|C|1527
9G8M|1|S2|G|1528

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19