IL_9G8M_226
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G8M_226 not in the Motif Atlas
- Homologous match to IL_8C3A_471
- Geometric discrepancy: 0.0915
- The information below is about IL_8C3A_471
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9G8M|1|S2|G|1702
9G8M|1|S2|C|1703
9G8M|1|S2|C|1704
9G8M|1|S2|C|1705
*
9G8M|1|S2|G|1829
9G8M|1|S2|U|1830
9G8M|1|S2|A|1831
9G8M|1|S2|A|1832
9G8M|1|S2|C|1833
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain X
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
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