IL_9G8M_232

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_232 not in the Motif Atlas

Homologous match to IL_8C3A_477

Geometric discrepancy: 0.1001

The information below is about IL_8C3A_477

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

9G8M|1|S2|U|1729
9G8M|1|S2|U|1730
9G8M|1|S2|A|1731
*
9G8M|1|S2|U|1803
9G8M|1|S2|U|1804
9G8M|1|S2|G|1805

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LV

60S ribosomal protein L23

Chain SI

40S ribosomal protein S8