IL_9GFT_012

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9GFT|1|0|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1435

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9GFT|1|0|G|147
9GFT|1|0|G|148
9GFT|1|0|A|149
9GFT|1|0|U|150
9GFT|1|0|A|151
9GFT|1|0|A|152
9GFT|1|0|C|153
*
9GFT|1|0|G|168
9GFT|1|0|C|169
9GFT|1|0|U|170
9GFT|1|0|A|171
9GFT|1|0|A|172
9GFT|1|0|U|173
9GFT|1|0|A|174
9GFT|1|0|C|175

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain u

Small ribosomal subunit protein bS20