IL_9GFT_082

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9GFT|1|AA|U|244, 9GFT|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_082 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1005

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

9GFT|1|AA|G|242
9GFT|1|AA|A|243
9GFT|1|AA|U|244
9GFT|1|AA|U|245
9GFT|1|AA|A|246
9GFT|1|AA|G|247
*
9GFT|1|AA|C|277
9GFT|1|AA|G|278
9GFT|1|AA|A|279
9GFT|1|AA|C|280
9GFT|1|AA|G|281
9GFT|1|AA|A|282
9GFT|1|AA|U|283
9GFT|1|AA|C|284

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

Small ribosomal subunit protein uS17

Chain z

Small ribosomal subunit protein uS12