IL_9GFT_086

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_086 not in the Motif Atlas

Homologous match to IL_5J7L_018

Geometric discrepancy: 0.1532

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

9GFT|1|AA|A|371
9GFT|1|AA|C|372
9GFT|1|AA|A|373
9GFT|1|AA|A|374
9GFT|1|AA|U|375
*
9GFT|1|AA|A|389
9GFT|1|AA|U|390

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

Small ribosomal subunit protein bS16

Chain U

Large ribosomal subunit protein bL9