IL_9GFT_089

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_089 not in the Motif Atlas

Geometric match to IL_5J7L_021

Geometric discrepancy: 0.1577

The information below is about IL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33323.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9GFT|1|AA|C|440
9GFT|1|AA|A|441
9GFT|1|AA|G|442
*
9GFT|1|AA|C|492
9GFT|1|AA|A|493
9GFT|1|AA|G|494
9GFT|1|AA|A|495
9GFT|1|AA|A|496
9GFT|1|AA|G|497

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

Small ribosomal subunit protein uS4