IL_9GFT_104

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_104 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.1059

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9GFT|1|AA|G|774
9GFT|1|AA|G|775
9GFT|1|AA|G|776
9GFT|1|AA|A|777
9GFT|1|AA|G|778
*
9GFT|1|AA|U|804
9GFT|1|AA|C|805

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AV

Large subunit ribosomal RNA; LSU rRNA

Chain AX

Large ribosomal subunit protein uL2

Chain y

Small ribosomal subunit protein uS11