IL_9GFT_116

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

9GFT|1|AA|C|1200, 9GFT|1|AA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_116 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1122

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9GFT|1|AA|G|1057
9GFT|1|AA|G|1058
*
9GFT|1|AA|U|1199
9GFT|1|AA|C|1200
9GFT|1|AA|A|1201
9GFT|1|AA|U|1202
9GFT|1|AA|C|1203

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS3

Chain AJ

Small ribosomal subunit protein uS10

Chain AM

Small ribosomal subunit protein uS14