3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUUGC*GAACUC
Length
11 nucleotides
Bulged bases
9GFT|1|AA|U|1126
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_119 not in the Motif Atlas
Homologous match to IL_5J7L_051
Geometric discrepancy: 0.1675
The information below is about IL_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06691.1
Basepair signature
cWW-cWS-L-R-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

9GFT|1|AA|G|1124
9GFT|1|AA|U|1125
9GFT|1|AA|U|1126
9GFT|1|AA|G|1127
9GFT|1|AA|C|1128
*
9GFT|1|AA|G|1144
9GFT|1|AA|A|1145
9GFT|1|AA|A|1146
9GFT|1|AA|C|1147
9GFT|1|AA|U|1148
9GFT|1|AA|C|1149

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AI
Small ribosomal subunit protein uS9
Chain AJ
Small ribosomal subunit protein uS10
Chain B
ATP-dependent RNA helicase HrpA

Coloring options:


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