IL_9GFT_121

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

9GFT|1|AA|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_121 not in the Motif Atlas

Geometric match to IL_4LFB_050

Geometric discrepancy: 0.2132

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9GFT|1|AA|C|1158
9GFT|1|AA|U|1159
9GFT|1|AA|G|1160
9GFT|1|AA|C|1161
*
9GFT|1|AA|G|1175
9GFT|1|AA|A|1176
9GFT|1|AA|G|1177
9GFT|1|AA|G|1178
9GFT|1|AA|A|1179
9GFT|1|AA|A|1180
9GFT|1|AA|G|1181

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

Small ribosomal subunit protein uS2

Chain AI

Small ribosomal subunit protein uS9

Chain B

ATP-dependent RNA helicase HrpA