IL_9GFT_131

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_131 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.1232

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

9GFT|1|AA|G|1416
9GFT|1|AA|G|1417
9GFT|1|AA|A|1418
9GFT|1|AA|G|1419
*
9GFT|1|AA|U|1481
9GFT|1|AA|G|1482
9GFT|1|AA|A|1483
9GFT|1|AA|C|1484

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AV

Large subunit ribosomal RNA; LSU rRNA