IL_9GFT_149
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUAAC*GGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GFT_149 not in the Motif Atlas
- Homologous match to IL_5J7L_258
- Geometric discrepancy: 0.1686
- The information below is about IL_5J7L_258
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_66798.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9GFT|1|AV|U|606
9GFT|1|AV|U|607
9GFT|1|AV|A|608
9GFT|1|AV|A|609
9GFT|1|AV|C|610
*
9GFT|1|AV|G|618
9GFT|1|AV|G|619
9GFT|1|AV|G|620
9GFT|1|AV|A|621
9GFT|1|AV|G|622
Current chains
- Chain AV
- 23S RNA
Nearby chains
- Chain AZ
- Large ribosomal subunit protein uL4
- Chain Ag
- Large ribosomal subunit protein uL15
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