IL_9GFT_149

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_149 not in the Motif Atlas

Homologous match to IL_5J7L_258

Geometric discrepancy: 0.1686

The information below is about IL_5J7L_258

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9GFT|1|AV|U|606
9GFT|1|AV|U|607
9GFT|1|AV|A|608
9GFT|1|AV|A|609
9GFT|1|AV|C|610
*
9GFT|1|AV|G|618
9GFT|1|AV|G|619
9GFT|1|AV|G|620
9GFT|1|AV|A|621
9GFT|1|AV|G|622

Current chains

Chain AV

23S RNA

Nearby chains

Chain AZ

Large ribosomal subunit protein uL4

Chain Ag

Large ribosomal subunit protein uL15