3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
9GFT|1|AV|G|801, 9GFT|1|AV|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_151 not in the Motif Atlas
Homologous match to IL_5J7L_260
Geometric discrepancy: 0.1187
The information below is about IL_5J7L_260
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

9GFT|1|AV|G|674
9GFT|1|AV|A|675
9GFT|1|AV|A|676
9GFT|1|AV|A|677
9GFT|1|AV|C|678
*
9GFT|1|AV|G|799
9GFT|1|AV|A|800
9GFT|1|AV|G|801
9GFT|1|AV|A|802
9GFT|1|AV|U|803
9GFT|1|AV|A|804
9GFT|1|AV|G|805
9GFT|1|AV|C|806

Current chains

Chain AV
23S RNA

Nearby chains

Chain AZ
Large ribosomal subunit protein uL4
Chain Ag
Large ribosomal subunit protein uL15

Coloring options:


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