3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCACU*AAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_162 not in the Motif Atlas
Homologous match to IL_5J7L_272
Geometric discrepancy: 0.1702
The information below is about IL_5J7L_272
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_26222.2
Basepair signature
cWW-cWS-cSH-tWH-R-L-R-cWW
Number of instances in this motif group
6

Unit IDs

9GFT|1|AV|G|864
9GFT|1|AV|C|865
9GFT|1|AV|A|866
9GFT|1|AV|C|867
9GFT|1|AV|U|868
*
9GFT|1|AV|A|909
9GFT|1|AV|A|910
9GFT|1|AV|A|911
9GFT|1|AV|C|912

Current chains

Chain AV
23S RNA

Nearby chains

Chain AW
5S ribosomal RNA; 5S rRNA
Chain Ah
50S ribosomal protein L16

Coloring options:


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