IL_9GFT_165

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

9GFT|1|AV|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_165 not in the Motif Atlas

Homologous match to IL_5J7L_275

Geometric discrepancy: 0.4792

The information below is about IL_5J7L_275

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29366.1

Basepair signature

cWW-cWW

Number of instances in this motif group

266

Unit IDs

9GFT|1|AV|G|880
9GFT|1|AV|G|881
*
9GFT|1|AV|U|895
9GFT|1|AV|A|896
9GFT|1|AV|C|897

Current chains

Chain AV

23S RNA

Nearby chains

Chain A3

Transfer RNA; tRNA

Chain Ah

50S ribosomal protein L16