IL_9GFT_175

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

9GFT|1|AV|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_175 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.5206

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

9GFT|1|AV|G|1059
9GFT|1|AV|U|1060
9GFT|1|AV|U|1061
9GFT|1|AV|G|1062
*
9GFT|1|AV|C|1076
9GFT|1|AV|A|1077
9GFT|1|AV|U|1078
9GFT|1|AV|C|1079

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ad

50S ribosomal protein L11