IL_9GFT_179

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9GFT|1|AV|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_179 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.178

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9GFT|1|AV|C|1208
9GFT|1|AV|U|1209
9GFT|1|AV|G|1210
9GFT|1|AV|C|1211
9GFT|1|AV|G|1212
9GFT|1|AV|A|1213
9GFT|1|AV|A|1214
9GFT|1|AV|G|1215
*
9GFT|1|AV|U|1234
9GFT|1|AV|G|1235
9GFT|1|AV|G|1236
9GFT|1|AV|A|1237
9GFT|1|AV|G|1238

Current chains

Chain AV

23S RNA

Nearby chains

Chain Al

Large ribosomal subunit protein bL20