IL_9GFT_188

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

9GFT|1|AV|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_188 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.0831

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9GFT|1|AV|C|1437
9GFT|1|AV|U|1438
9GFT|1|AV|A|1439
9GFT|1|AV|U|1440
*
9GFT|1|AV|A|1551
9GFT|1|AV|A|1552
9GFT|1|AV|A|1553
9GFT|1|AV|U|1554
9GFT|1|AV|G|1555

Current chains

Chain AV

23S RNA

Nearby chains