3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUC*GCGAG
Length
8 nucleotides
Bulged bases
9GFT|1|AV|G|2576, 9GFT|1|AV|A|2577
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_233 not in the Motif Atlas
Homologous match to IL_5J7L_340
Geometric discrepancy: 0.1111
The information below is about IL_5J7L_340
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

9GFT|1|AV|C|2510
9GFT|1|AV|U|2511
9GFT|1|AV|C|2512
*
9GFT|1|AV|G|2574
9GFT|1|AV|C|2575
9GFT|1|AV|G|2576
9GFT|1|AV|A|2577
9GFT|1|AV|G|2578

Current chains

Chain AV
23S RNA

Nearby chains

Chain AY
50S ribosomal protein L3
Chain Av
Large ribosomal subunit protein bL32

Coloring options:


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