IL_9GFT_238

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_238 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.2194

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9GFT|1|AV|C|2652
9GFT|1|AV|U|2653
9GFT|1|AV|A|2654
9GFT|1|AV|G|2655
9GFT|1|AV|U|2656
9GFT|1|AV|A|2657
9GFT|1|AV|C|2658
*
9GFT|1|AV|G|2663
9GFT|1|AV|G|2664
9GFT|1|AV|A|2665
9GFT|1|AV|C|2666
9GFT|1|AV|C|2667
9GFT|1|AV|G|2668

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ab

Large ribosomal subunit protein uL6