IL_9GFT_242

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9GFT|1|AV|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_242 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1379

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9GFT|1|AV|G|2737
9GFT|1|AV|A|2738
9GFT|1|AV|U|2739
9GFT|1|AV|A|2740
9GFT|1|AV|A|2741
9GFT|1|AV|G|2742
*
9GFT|1|AV|C|2762
9GFT|1|AV|G|2763
9GFT|1|AV|A|2764
9GFT|1|AV|A|2765
9GFT|1|AV|A|2766
9GFT|1|AV|C|2767

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ab

Large ribosomal subunit protein uL6

Chain Ae

Large ribosomal subunit protein uL13

Chain Az

Large ribosomal subunit protein bL36A