IL_9GFT_259

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_259 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0853

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9GFT|1|N|C|239
9GFT|1|N|C|240
9GFT|1|N|A|241
9GFT|1|N|G|242
9GFT|1|N|U|243
9GFT|1|N|A|244
9GFT|1|N|G|245
*
9GFT|1|N|C|253
9GFT|1|N|G|254
9GFT|1|N|A|255
9GFT|1|N|A|256
9GFT|1|N|C|257
9GFT|1|N|G|258

Current chains

Chain N

23S RNA

Nearby chains

Chain Y

Large ribosomal subunit protein uL15

Chain q

Large ribosomal subunit protein bL35