IL_9GFT_268

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9GFT|1|N|G|801, 9GFT|1|N|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_268 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0887

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9GFT|1|N|G|674
9GFT|1|N|A|675
9GFT|1|N|A|676
9GFT|1|N|A|677
9GFT|1|N|C|678
*
9GFT|1|N|G|799
9GFT|1|N|A|800
9GFT|1|N|G|801
9GFT|1|N|A|802
9GFT|1|N|U|803
9GFT|1|N|A|804
9GFT|1|N|G|805
9GFT|1|N|C|806

Current chains

Chain N

23S RNA

Nearby chains

Chain R

Large ribosomal subunit protein uL4

Chain Y

Large ribosomal subunit protein uL15