IL_9GFT_280
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GFT_280 not in the Motif Atlas
- Homologous match to IL_5J7L_272
- Geometric discrepancy: 0.1217
- The information below is about IL_5J7L_272
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
9GFT|1|N|G|864
9GFT|1|N|C|865
9GFT|1|N|A|866
9GFT|1|N|C|867
9GFT|1|N|U|868
*
9GFT|1|N|A|909
9GFT|1|N|A|910
9GFT|1|N|A|911
9GFT|1|N|C|912
Current chains
- Chain N
- 23S RNA
Nearby chains
- Chain O
- 5S ribosomal RNA; 5S rRNA
- Chain Z
- 50S ribosomal protein L16
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