3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAG*CGGC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_291 not in the Motif Atlas
Homologous match to IL_5J7L_283
Geometric discrepancy: 0.1434
The information below is about IL_5J7L_283
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

9GFT|1|N|G|1038
9GFT|1|N|A|1039
9GFT|1|N|A|1040
9GFT|1|N|G|1041
*
9GFT|1|N|C|1114
9GFT|1|N|G|1115
9GFT|1|N|G|1116
9GFT|1|N|C|1117

Current chains

Chain N
23S RNA

Nearby chains

Chain T
Large ribosomal subunit protein uL6
Chain Z
50S ribosomal protein L16
Chain i
Large ribosomal subunit protein bL25

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1867 s
Application loaded.