IL_9GFT_291
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GFT_291 not in the Motif Atlas
- Homologous match to IL_5J7L_283
- Geometric discrepancy: 0.1434
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
9GFT|1|N|G|1038
9GFT|1|N|A|1039
9GFT|1|N|A|1040
9GFT|1|N|G|1041
*
9GFT|1|N|C|1114
9GFT|1|N|G|1115
9GFT|1|N|G|1116
9GFT|1|N|C|1117
Current chains
- Chain N
- 23S RNA
Nearby chains
- Chain T
- Large ribosomal subunit protein uL6
- Chain Z
- 50S ribosomal protein L16
- Chain i
- Large ribosomal subunit protein bL25
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