IL_9GFT_300

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_300 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.1236

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9GFT|1|N|C|1351
9GFT|1|N|U|1352
9GFT|1|N|A|1353
9GFT|1|N|A|1354
9GFT|1|N|G|1355
*
9GFT|1|N|C|1376
9GFT|1|N|G|1377
9GFT|1|N|A|1378
9GFT|1|N|U|1379
9GFT|1|N|G|1380

Current chains

Chain N

23S RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL2

Chain p

Large ribosomal subunit protein bL34