IL_9GFT_326

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_326 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.11

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GFT|1|N|U|1851
9GFT|1|N|U|1852
9GFT|1|N|A|1853
9GFT|1|N|A|1854
9GFT|1|N|U|1855
9GFT|1|N|U|1856
9GFT|1|N|G|1857
9GFT|1|N|A|1858
9GFT|1|N|U|1859
9GFT|1|N|G|1860
*
9GFT|1|N|U|1882
9GFT|1|N|U|1883
9GFT|1|N|G|1884
9GFT|1|N|A|1885
9GFT|1|N|U|1886
9GFT|1|N|C|1887
9GFT|1|N|G|1888
9GFT|1|N|A|1889
9GFT|1|N|A|1890
9GFT|1|N|G|1891

Current chains

Chain N

23S RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL1