IL_9GFT_333

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

9GFT|1|N|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_333 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.1057

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

9GFT|1|N|A|2070
9GFT|1|N|A|2071
*
9GFT|1|N|U|2438
9GFT|1|N|A|2439
9GFT|1|N|C|2440
9GFT|1|N|U|2441

Current chains

Chain N

23S RNA

Nearby chains

Chain M

Transfer RNA; tRNA

Chain P

Large ribosomal subunit protein uL2

Chain s

VemP nascent chain