IL_9GFT_336

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_336 not in the Motif Atlas

Geometric match to IL_4LFB_010

Geometric discrepancy: 0.136

The information below is about IL_4LFB_010

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9GFT|1|N|C|2103
9GFT|1|N|C|2104
9GFT|1|N|U|2105
*
9GFT|1|N|A|2184
9GFT|1|N|U|2185
9GFT|1|N|G|2186

Current chains

Chain N

23S RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain C

Large ribosomal subunit protein uL1