IL_9GFT_346

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

9GFT|1|N|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_346 not in the Motif Atlas

Homologous match to IL_9DFE_094

Geometric discrepancy: 0.1326

The information below is about IL_9DFE_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

9GFT|1|N|A|2459
9GFT|1|N|U|2460
9GFT|1|N|A|2461
*
9GFT|1|N|U|2489
9GFT|1|N|G|2490
9GFT|1|N|U|2491
9GFT|1|N|U|2492
9GFT|1|N|U|2493

Current chains

Chain N

23S RNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain Z

50S ribosomal protein L16