IL_9GFT_367
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- 9GFT|1|O|C|35, 9GFT|1|O|C|36
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GFT_367 not in the Motif Atlas
- Homologous match to IL_5J7L_358
- Geometric discrepancy: 0.2957
- The information below is about IL_5J7L_358
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
9GFT|1|O|A|34
9GFT|1|O|C|35
9GFT|1|O|C|36
9GFT|1|O|C|37
9GFT|1|O|C|38
*
9GFT|1|O|G|44
9GFT|1|O|A|45
9GFT|1|O|A|46
9GFT|1|O|C|47
9GFT|1|O|U|48
Current chains
- Chain O
- 5S ribosomal RNA
Nearby chains
- Chain L
- Large ribosomal subunit protein bL31A
- Chain N
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- Large ribosomal subunit protein uL5
- Chain b
- Large ribosomal subunit protein uL18
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