IL_9GGR_103
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUAG*CGUAGAGA
- Length
- 13 nucleotides
- Bulged bases
- 9GGR|1|AA|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GGR_103 not in the Motif Atlas
- Homologous match to IL_5J7L_035
- Geometric discrepancy: 0.1536
- The information below is about IL_5J7L_035
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
9GGR|1|AA|U|684
9GGR|1|AA|G|685
9GGR|1|AA|U|686
9GGR|1|AA|A|687
9GGR|1|AA|G|688
*
9GGR|1|AA|C|699
9GGR|1|AA|G|700
9GGR|1|AA|U|701
9GGR|1|AA|A|702
9GGR|1|AA|G|703
9GGR|1|AA|A|704
9GGR|1|AA|G|705
9GGR|1|AA|A|706
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AV
- Large subunit ribosomal RNA; LSU rRNA
- Chain y
- Small ribosomal subunit protein uS11
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