IL_9GHA_098

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9GHA|1|a|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHA_098 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0485

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9GHA|1|a|U|1018
9GHA|1|a|U|1019
9GHA|1|a|A|1020
9GHA|1|a|A|1021
9GHA|1|a|G|1022
9GHA|1|a|U|1023
9GHA|1|a|G|1024
*
9GHA|1|a|C|1140
9GHA|1|a|U|1141
9GHA|1|a|A|1142
9GHA|1|a|A|1143
9GHA|1|a|A|1144

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain i

50S ribosomal protein L13