IL_9GHA_100
3D structure
- PDB id
- 9GHA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.24 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 9GHA|1|a|U|1033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GHA_100 not in the Motif Atlas
- Homologous match to IL_5J7L_282
- Geometric discrepancy: 0.048
- The information below is about IL_5J7L_282
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
9GHA|1|a|G|1031
9GHA|1|a|A|1032
9GHA|1|a|U|1033
9GHA|1|a|G|1034
*
9GHA|1|a|C|1121
9GHA|1|a|G|1122
9GHA|1|a|C|1123
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: