IL_9GHA_100

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9GHA|1|a|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHA_100 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.048

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9GHA|1|a|G|1031
9GHA|1|a|A|1032
9GHA|1|a|U|1033
9GHA|1|a|G|1034
*
9GHA|1|a|C|1121
9GHA|1|a|G|1122
9GHA|1|a|C|1123

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16