IL_9GHA_132

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9GHA|1|a|A|1801, 9GHA|1|a|C|1816, 9GHA|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHA_132 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0438

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9GHA|1|a|U|1798
9GHA|1|a|G|1799
9GHA|1|a|C|1800
9GHA|1|a|A|1801
9GHA|1|a|A|1802
9GHA|1|a|A|1803
9GHA|1|a|C|1804
*
9GHA|1|a|G|1813
9GHA|1|a|G|1814
9GHA|1|a|A|1815
9GHA|1|a|C|1816
9GHA|1|a|G|1817
9GHA|1|a|U|1818
9GHA|1|a|A|1819
9GHA|1|a|U|1820
9GHA|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2